List of Simulation Examples (Berkeley Madonna Version 10)

First download a simulation example of interest. Then open file from within Berkeley Madonna Version 10. If models do not directly run, used pdf-file for opening or open directly the *.mmd file by double clicking.

 

Solutions to Exercises 10.1.4

BATFERM                        Batch Fermentation  (10.1.1)

CHEMO                            Chemostat Fermentation  (10.1.2)

FEDBAT                           Fed Batch Fermentation  (10.1.3)

MMKINET                        Kinetics of Enzyme Action  (10.2.1)

LINEWEAV                      Lineweaver-Burk Plot  (10.2.2)

OLIGO                              Oligosaccharide Production in Lactose Hydrolysis  (10.2.3)

BATSTER                         Batch Heat Sterilization (10.2.4)

CORONADYN                  Growth of the Corona Virus (10.2.4), CORONADATASWISS, CORONASLOPESWISS, CDSlog

VARVOL                          Variable Volume Fermentation  (10.3.1)

VARVOLD                        Variable Volume Fermentation  (10.3.1)

PENFERM                         Penicillin Fermentation Using Elemental Balancing  (10.3.2)

ETHFERM                        Ethanol Fed Batch Diauxic Fermentation  (10.3.3)

REPFED                            Repeated Fed Batch Culture  (10.3.4)

REPLCUL                         Repeated Medium Replacement Culture  (10.3.5)

PENOXY                           Penicillin Production in a Fed Batch Fermenter  (10.3.6)

CHEMOSTA                     Steady-State Chemostat  (10.4.1)

CONINHIB                        Continuous Culture with Inhibitory Substrate  (10.4.2)

ACTNITR                          Nitrification in Activated Sludge Process  (10.4.3)

ENZTUBE                         Tubular Enzyme Reactor  (10.4.4)

DUAL                               Dual Substrate Limitation  (10.4.5)

TWOSTAGE                     Two-Stage Chemostat with Additional Stream  (10.4.6)

STAGED                           Two Stage Culture with Product Inhibition  (10.4.7)

FBR                                  Fluidized Bed Recycle Reactor  (10.4.8)

NITBED                            Nitrification in a Fluidized Bed Reactor (10.4.9)

ENZCON                           Continuous Enzymatic Reactor  (10.4.10)

DEACTENZ                      Reactor Cascade with Deactivating Enzyme  (10.4.11)

PHBTWO                          Production of PHB in a Two-Tank Reactor Process (10.4.12)

DCMDEG                          Dichloromethane in a Biofilm Fluidized Sand Bed  (10.4.13)

OXENZ                             Aeration of a Tank Reactor for Enzymatic Oxidation  (10.5.1)

INHIB                               Gas and Liquid Oxygen Dynamics in Fermenter  (10.5.2)

NITRIF                             Batch Nitrification with Oxygen Transfer  (10.5.3)

OXDYN                            Oxygen Uptake and Aeration Dynamics  (10.5.4)

KLADYN                          Dynamic KLa Methods (10.5.5)

KLAFIT                            Dynamic KLa Methods (10.5.5) KLADATA

ELECTFIT                         Dynamic KLa Methods (10.5.5) ELECTDATA

BIOFILTDYN                    Biofiltration Column for Two Inhibitory Substrates (10.5.6)

TITERDYN                       Optical Sensing in Microtiter Plates (10.5.7) TITERDYNDATA

TITERBIO                         Optical Sensing in Microtiter Plates (10.5.7)

BIOFILM                          Double Substrate Biofilm Reaction  (10.6.1)

ENZSPLIT                         Steady-State Split Boundary Solution  (10.6.2)

ENZDYN                          Dynamic Porous Diffusion and Reaction  (10.6.3)

CELLDIFFBEAD               Oxygen Diffusion in Animal Cells  (10.6.4)

CELLDIFFCYL                 Oxygen Diffusion to a Single Cell or Cell Aggregate (10.6.5)

NITBEDFILM                    Immobilized Biofilm in a Nitrification Column  (10.6.6)

TEMPCONT                      Feedback Control of a Water Heater  (10.7.1)

FERMTEMP                      Temperature Control of Fermentation  (10.7.2)

TURBCON                        Turbidostat Response  (10.7.3)

CONTCON                        Feed Rate Control of Inhibitory Substrate (10.7.4)

ADAPTOXCONT              Adaptive Control of Dissolved Oxygen (10.7.5)

MEMINH                          Cell Retention Membrane Reactor  (10.8.1 )

PERVAPSUB                    Fermentation with Pervaporation  (10.8.2)

LACMEMRECYC              Two Stage Fermentor with Cell Recycle (10.8.3)

LACREACT                      Hollow Fiber Enzyme Reactor for Lactose Hydrolysis (10.8.4)

ANIMALIMMOB              Animal Cells in a Fluidized Bed Reactor (10.8.5)

COMMENSA                    Bacteria with Opposite Substrate Preferences  (10.9.1)

COMPASM                       Competitive Assimilation and Commensalism  (10.9.2)

PLASMID                         Stability of Recombinant Microorganisms   (10.9.3)

MIXPOP                           Predator-Prey Population Dynamics  (10.9.4)

TWOONE                          Competition Between Organisms  (10.9.5)

FILMPOP                          Competition for an Inhibitory Substrate in a Biofilm (10.9.6)

ANAEMEAS                     Model for Anaerobic Reactor Activity Measurement (10.9.7)

SIRDYN                           Dynamics of an Epidemic Using the SIR Model (10.9.8), DayRandD, Ddeath, Dinf, Infpres

SIRDYNDIM                     Dynamics of an Epidemic Using the SIR Model (10.9.8)

YEASTOSC                       Oscillations in Continuous Yeast Culture  (10.10.1)

PHB                                  Structured Model for PHB Production (10.10.2)

MAMMCELLCYCLE         Mammalian Cell Cycle Control  (10.10.3 )

POTATO_CONTROL         Metabolic Fluxes in Secondary Metabolism in Potato  (10.10.4)

POTATO_ELICITOR         Metabolic Fluxes in Secondary Metabolism in Potato  (10.10.4)

SUBTILIS                         Structured Model of the Production of Acetoin and Butanediol  (10.10.5 )

CHOMAB                         Production of Monoclonal Antibodies by CHO Cells (10.10.6)