List of Simulation Examples
(Berkeley Madonna Version 10)
First download a simulation
example of interest. Then open file from within Berkeley Madonna Version 10. If
models do not directly run, used pdf-file
for opening or open directly the *.mmd file by double clicking.
BATFERM Batch
Fermentation (10.1.1)
CHEMO Chemostat
Fermentation (10.1.2)
FEDBAT Fed
Batch Fermentation (10.1.3)
MMKINET Kinetics
of Enzyme Action (10.2.1)
LINEWEAV Lineweaver-Burk
Plot (10.2.2)
OLIGO Oligosaccharide
Production in Lactose Hydrolysis
(10.2.3)
BATSTER Batch
Heat Sterilization (10.2.4)
CORONADYN Growth of the Corona Virus
(10.2.4), CORONADATASWISS, CORONASLOPESWISS, CDSlog
VARVOL Variable Volume
Fermentation (10.3.1)
VARVOLD Variable
Volume Fermentation (10.3.1)
PENFERM Penicillin
Fermentation Using Elemental Balancing
(10.3.2)
ETHFERM Ethanol
Fed Batch Diauxic Fermentation (10.3.3)
REPFED Repeated
Fed Batch Culture (10.3.4)
REPLCUL Repeated
Medium Replacement Culture (10.3.5)
PENOXY Penicillin
Production in a Fed Batch Fermenter
(10.3.6)
CHEMOSTA Steady-State
Chemostat (10.4.1)
CONINHIB Continuous
Culture with Inhibitory Substrate
(10.4.2)
ACTNITR Nitrification
in Activated Sludge Process (10.4.3)
ENZTUBE Tubular
Enzyme Reactor (10.4.4)
DUAL Dual
Substrate Limitation (10.4.5)
TWOSTAGE Two-Stage
Chemostat with Additional Stream
(10.4.6)
STAGED Two
Stage Culture with Product Inhibition
(10.4.7)
FBR Fluidized
Bed Recycle Reactor (10.4.8)
NITBED Nitrification
in a Fluidized Bed Reactor (10.4.9)
ENZCON Continuous
Enzymatic Reactor (10.4.10)
DEACTENZ Reactor
Cascade with Deactivating Enzyme
(10.4.11)
PHBTWO Production
of PHB in a Two-Tank Reactor Process (10.4.12)
DCMDEG Dichloromethane
in a Biofilm Fluidized Sand Bed (10.4.13)
OXENZ Aeration
of a Tank Reactor for Enzymatic Oxidation
(10.5.1)
INHIB Gas and Liquid
Oxygen Dynamics in Fermenter (10.5.2)
NITRIF Batch
Nitrification with Oxygen Transfer
(10.5.3)
OXDYN Oxygen
Uptake and Aeration Dynamics (10.5.4)
KLADYN Dynamic KLa Methods
(10.5.5)
KLAFIT Dynamic KLa Methods
(10.5.5) KLADATA
ELECTFIT Dynamic
KLa Methods (10.5.5) ELECTDATA
BIOFILTDYN Biofiltration
Column for Two Inhibitory Substrates (10.5.6)
TITERDYN Optical Sensing in
Microtiter Plates (10.5.7) TITERDYNDATA
TITERBIO Optical
Sensing in Microtiter Plates (10.5.7)
BIOFILM Double
Substrate Biofilm Reaction (10.6.1)
ENZSPLIT Steady-State
Split Boundary Solution (10.6.2)
ENZDYN Dynamic
Porous Diffusion and Reaction (10.6.3)
CELLDIFFBEAD Oxygen
Diffusion in Animal Cells (10.6.4)
CELLDIFFCYL Oxygen
Diffusion to a Single Cell or Cell Aggregate (10.6.5)
NITBEDFILM Immobilized
Biofilm in a Nitrification Column
(10.6.6)
TEMPCONT Feedback
Control of a Water Heater (10.7.1)
FERMTEMP Temperature
Control of Fermentation (10.7.2)
TURBCON Turbidostat
Response (10.7.3)
CONTCON Feed
Rate Control of Inhibitory Substrate (10.7.4)
ADAPTOXCONT
Adaptive
Control of Dissolved Oxygen (10.7.5)
MEMINH Cell
Retention Membrane Reactor (10.8.1 )
PERVAPSUB Fermentation
with Pervaporation (10.8.2)
LACMEMRECYC Two
Stage Fermentor with Cell Recycle (10.8.3)
LACREACT Hollow
Fiber Enzyme Reactor for Lactose Hydrolysis (10.8.4)
ANIMALIMMOB Animal
Cells in a Fluidized Bed Reactor (10.8.5)
COMMENSA Bacteria
with Opposite Substrate Preferences
(10.9.1)
COMPASM Competitive
Assimilation and Commensalism (10.9.2)
PLASMID Stability
of Recombinant Microorganisms (10.9.3)
MIXPOP Predator-Prey
Population Dynamics (10.9.4)
TWOONE Competition
Between Organisms (10.9.5)
FILMPOP Competition
for an Inhibitory Substrate in a Biofilm (10.9.6)
ANAEMEAS Model
for Anaerobic Reactor Activity Measurement (10.9.7)
SIRDYN Dynamics of an
Epidemic Using the SIR Model (10.9.8), DayRandD,
Ddeath, Dinf, Infpres
SIRDYNDIM Dynamics of an Epidemic
Using the SIR Model (10.9.8)
YEASTOSC Oscillations
in Continuous Yeast Culture (10.10.1)
PHB Structured
Model for PHB Production (10.10.2)
MAMMCELLCYCLE Mammalian
Cell Cycle Control (10.10.3 )
POTATO_CONTROL Metabolic
Fluxes in Secondary Metabolism in Potato
(10.10.4)
POTATO_ELICITOR Metabolic
Fluxes in Secondary Metabolism in Potato
(10.10.4)
SUBTILIS Structured
Model of the Production of Acetoin and Butanediol (10.10.5 )
CHOMAB Production
of Monoclonal Antibodies by CHO Cells (10.10.6)